Budget 2026: The Startup Tax Changes That Actually Matter

Budget 2026: The Startup Tax Changes That Actually Matter

The 2026-27 Budget gave startups more than a passing mention. Here’s a plain-English breakdown of the wins, the R&D restructure, and the measures that could cost founders at exit.

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The 2026-27 Budget gave startups more than a passing mention. Here’s a plain-English breakdown of the wins, the R&D restructure, and the measures that could cost founders at exit.

Treasurer Jim Chalmers handed down the 2026-27 Budget on 12 May, and for once it gave startups more than passing acknowledgement. There is real money on the table, some genuine wins, and a couple of measures that change the long-game economics for founders. Here is the tight version.

The wins

$20,000 instant asset write-off, now permanent

From 1 July 2026, small businesses under $10m turnover can keep instantly deducting eligible asset purchases up to $20,000. The threshold is not new. The certainty is. No more last-minute EOFY extensions.

Loss carry-back is back

From 1 July 2026, companies under $1bn turnover can carry a revenue tax loss back against tax paid in the previous two years and get a cash refund. The refund is capped at the company tax you’ve actually paid in the previous two years. A COVID-era measure returning permanently. After two lean years, many startups have hunkered down to modest profitability. Loss carry-back is the lever to get those same companies investing again. Reinvest, take a deliberate loss year, and the ATO refunds some of the tax you’ve just started paying.

New loss refundability for early-stage startups

From 1 July 2028, loss-making startups under $10m turnover in their first two years can convert losses into a refundable offset, capped at FBT and PAYG withholding on Australian wages. In plain English: hire local staff in your first two years, and the government refunds you the payroll taxes against your losses. Combined with R&D refundability, this is a genuinely useful early-stage cash mechanism.

We have written a separate, more technical piece on how loss carry-back and loss refundability work in practice, with worked examples for each.

The R&D restructure

The R&D restructure is significant, but it won’t affect things yet. From 1 July 2028, the R&D Tax Incentive is being rebuilt:

  • Minimum claim threshold rises from $20,000 to $50,000
  • Core offset rates increase from 43.5% to roughly 48%
  • Supporting R&D activities lose eligibility
  • Refundable offset turnover threshold lifts from $20m to $50m
  • Refundability is capped at companies under 10 years old

Some startups will be better off. Hardware, biotech, software and deep tech founders will mostly be worse off. We have written a separate deep dive on the R&D changes covering the detail and what to do about it.

The grenades

30% minimum tax on discretionary trusts (committed)

From 1 July 2028, trust income at the trustee level faces a 30% floor. With 30% now captured at the trust level, the benefit of streaming to lower-taxed beneficiaries is gone, and bucket company strategies are blocked. For founders who are the sole or majority beneficiary on the top marginal rate, the trust change itself doesn’t shift your total tax. The flow-through mechanism is unchanged.

CGT discount being replaced (subject to consultation for startups)

From 1 July 2027, the 50% CGT discount is replaced with an inflation-indexed model plus a 30% minimum tax on capital gains. For founders eyeing an exit, the effective tax burden on gains roughly doubles. The government has explicitly flagged consultation on a carve-out for early-stage and startup businesses. No detail or timeline yet, but the outcome of that consultation is the single biggest variable on what an exit actually costs.

This also reshapes how startups use equity to attract and retain talent. Employee Share Ownership Plans, loan-backed share plans and premium-priced options all become less attractive.

We have written a separate piece on CGT and trust changes for founders with worked examples on what an exit through a trust looks like under the new rules.

If you’re setting up a new company now and wondering whether to still use a trust, we have a separate piece on that question.

Also worth knowing

On the venture capital side, VCLP and ESVCLP thresholds expand from 1 July 2027, meaning bigger funds and a wider pool of eligible investee companies for Series A and B rounds. Working against that, the Eligible Venture Capital Investor program closed to new applications on budget night, removing one of the tax-efficient pathways angel investors and family offices used to write early cheques. Both matter more to your investors than to you directly, but they shape the capital you can raise.

This is general information, not advice. The rules above are technical and the right move depends on your specific situation.

Standard Ledger helps founders across Australia and the UK navigate tax structuring, R&D claims and forecasting. Book a call with our team today!

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Frequently asked questions

The 2026-27 Federal Budget introduced several measures directly affecting Australian startups. The $20,000 instant asset write-off became permanent for businesses under $10m turnover from 1 July 2026. Loss carry-back was made permanent, allowing companies to recover tax paid in the previous two years. The R&D Tax Incentive is being restructured from 1 July 2028, with the core offset rate rising to roughly 48%. On the downside, the 50% CGT discount is being replaced from 1 July 2027, and discretionary trusts face a new 30% minimum tax from 1 July 2028.

Loss carry-back allows Australian companies with turnover under $1bn to offset a current-year tax loss against company tax paid in the previous two years, receiving the difference as a cash refund from the ATO. It became permanently available from 1 July 2026. It applies to revenue losses only, and the refund is capped at the company tax actually paid in the prior two years. It’s particularly relevant for startups that reached modest profitability and are now reinvesting for growth.

From 1 July 2027, the 50% CGT discount is replaced with an inflation-indexed cost base model plus a 30% minimum tax on capital gains. For most founders whose shares have a near-zero cost base, indexation provides almost no relief, meaning the effective tax rate on exit roughly doubles compared to current rules. The government has flagged consultation on a possible carve-out for early-stage and startup businesses, but no detail has been confirmed. Gains accrued before 1 July 2027 retain the 50% discount under transitional rules.

From 1 July 2028, Australian startups in their first two years of operation with turnover under $10m can convert tax losses into a refundable tax offset. The refund is capped at the FBT and PAYG withholding paid on Australian wages in that loss year. It’s designed for pre-revenue and early-stage companies that have no profitable history to carry losses back against. It stacks on top of the R&D Tax Incentive refundable offset, meaning eligible startups hiring Australian staff can recover a significant portion of their early-stage losses in cash.

After the 2026 Federal Budget, the tax flexibility benefits of holding startup shares in a discretionary trust largely disappear from 1 July 2028. A new 30% minimum tax at the trustee level means income streaming to lower-rate beneficiaries and bucket company strategies no longer work. Asset protection remains a valid reason to use a trust, but for founders without significant personal assets to protect, holding shares personally is now simpler and comparably taxed. A rollover window from 1 July 2027 to 30 June 2030 allows restructuring out of a trust without triggering CGT consequences.

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